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Merge trunk into HA branch.

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git-svn-id: https://svn.apache.org/repos/asf/hadoop/common/branches/HDFS-1623@1245690 13f79535-47bb-0310-9956-ffa450edef68
This commit is contained in:
Aaron Myers 2012-02-17 18:19:31 +00:00
commit 53b7d6c6bc
14 changed files with 292 additions and 30 deletions
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5
hadoop-common-project/hadoop-common/CHANGES.txt
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@ -174,6 +174,7 @@ Release 0.23.2 - UNRELEASED
(sharad, todd via todd)
BUG FIXES
HADOOP-8054 NPE with FilterFileSystem (Daryn Sharp via bobby)
HADOOP-8042 When copying a file out of HDFS, modifying it, and uploading
it back into HDFS, the put fails due to a CRC mismatch
@ -196,6 +197,10 @@ Release 0.23.2 - UNRELEASED
HADOOP-8082 add hadoop-client and hadoop-minicluster to the
dependency-management section. (tucu)
HADOOP-8066 The full docs build intermittently fails (abayer via tucu)
HADOOP-8083 javadoc generation for some modules is not done under target/ (tucu)
Release 0.23.1 - 2012-02-08
INCOMPATIBLE CHANGES

5
hadoop-common-project/hadoop-common/src/main/java/org/apache/hadoop/fs/FilterFileSystem.java
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@ -80,6 +80,11 @@ public FileSystem getRawFileSystem() {
*/
public void initialize(URI name, Configuration conf) throws IOException {
super.initialize(name, conf);
// this is less than ideal, but existing filesystems sometimes neglect
// to initialize the embedded filesystem
if (fs.getConf() == null) {
fs.initialize(name, conf);
}
String scheme = name.getScheme();
if (!scheme.equals(fs.getUri().getScheme())) {
swapScheme = scheme;

7
hadoop-common-project/hadoop-common/src/main/java/org/apache/hadoop/fs/LocalFileSystem.java
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@ -48,13 +48,6 @@ public LocalFileSystem(FileSystem rawLocalFileSystem) {
super(rawLocalFileSystem);
}
@Override
public void initialize(URI uri, Configuration conf) throws IOException {
super.initialize(uri, conf);
// ctor didn't initialize the filtered fs
getRawFileSystem().initialize(uri, conf);
}
/** Convert a path to a File. */
public File pathToFile(Path path) {
return ((RawLocalFileSystem)fs).pathToFile(path);

125
hadoop-common-project/hadoop-common/src/test/java/org/apache/hadoop/fs/TestFilterFileSystem.java
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@ -18,23 +18,38 @@
package org.apache.hadoop.fs;
import static org.junit.Assert.*;
import static org.mockito.Matchers.*;
import static org.mockito.Mockito.*;
import java.io.IOException;
import java.lang.reflect.Method;
import java.lang.reflect.Modifier;
import java.net.URI;
import java.util.EnumSet;
import java.util.Iterator;
import junit.framework.TestCase;
import org.apache.commons.logging.Log;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.permission.FsPermission;
import org.apache.hadoop.fs.Options.CreateOpts;
import org.apache.hadoop.fs.Options.Rename;
import org.apache.hadoop.security.token.Token;
import org.apache.hadoop.util.Progressable;
import org.junit.BeforeClass;
import org.junit.Test;
public class TestFilterFileSystem extends TestCase {
public class TestFilterFileSystem {
private static final Log LOG = FileSystem.LOG;
private static final Configuration conf = new Configuration();
@BeforeClass
public static void setup() {
conf.set("fs.flfs.impl", FilterLocalFileSystem.class.getName());
conf.setBoolean("fs.flfs.impl.disable.cache", true);
conf.setBoolean("fs.file.impl.disable.cache", true);
}
public static class DontCheck {
public BlockLocation[] getFileBlockLocations(Path p,
@ -153,6 +168,7 @@ public Token<?> getDelegationToken(String renewer) throws IOException {
}
@Test
public void testFilterFileSystem() throws Exception {
for (Method m : FileSystem.class.getDeclaredMethods()) {
if (Modifier.isStatic(m.getModifiers()))
@ -176,4 +192,109 @@ public void testFilterFileSystem() throws Exception {
}
}
@Test
public void testFilterEmbedInit() throws Exception {
FileSystem mockFs = createMockFs(false); // no conf = need init
checkInit(new FilterFileSystem(mockFs), true);
}
@Test
public void testFilterEmbedNoInit() throws Exception {
FileSystem mockFs = createMockFs(true); // has conf = skip init
checkInit(new FilterFileSystem(mockFs), false);
}
@Test
public void testLocalEmbedInit() throws Exception {
FileSystem mockFs = createMockFs(false); // no conf = need init
checkInit(new LocalFileSystem(mockFs), true);
}
@Test
public void testLocalEmbedNoInit() throws Exception {
FileSystem mockFs = createMockFs(true); // has conf = skip init
checkInit(new LocalFileSystem(mockFs), false);
}
private FileSystem createMockFs(boolean useConf) {
FileSystem mockFs = mock(FileSystem.class);
when(mockFs.getUri()).thenReturn(URI.create("mock:/"));
when(mockFs.getConf()).thenReturn(useConf ? conf : null);
return mockFs;
}
@Test
public void testGetLocalFsSetsConfs() throws Exception {
LocalFileSystem lfs = FileSystem.getLocal(conf);
checkFsConf(lfs, conf, 2);
}
@Test
public void testGetFilterLocalFsSetsConfs() throws Exception {
FilterFileSystem flfs =
(FilterFileSystem) FileSystem.get(URI.create("flfs:/"), conf);
checkFsConf(flfs, conf, 3);
}
@Test
public void testInitLocalFsSetsConfs() throws Exception {
LocalFileSystem lfs = new LocalFileSystem();
checkFsConf(lfs, null, 2);
lfs.initialize(lfs.getUri(), conf);
checkFsConf(lfs, conf, 2);
}
@Test
public void testInitFilterFsSetsEmbedConf() throws Exception {
LocalFileSystem lfs = new LocalFileSystem();
checkFsConf(lfs, null, 2);
FilterFileSystem ffs = new FilterFileSystem(lfs);
assertEquals(lfs, ffs.getRawFileSystem());
checkFsConf(ffs, null, 3);
ffs.initialize(URI.create("filter:/"), conf);
checkFsConf(ffs, conf, 3);
}
@Test
public void testInitFilterLocalFsSetsEmbedConf() throws Exception {
FilterFileSystem flfs = new FilterLocalFileSystem();
assertEquals(LocalFileSystem.class, flfs.getRawFileSystem().getClass());
checkFsConf(flfs, null, 3);
flfs.initialize(URI.create("flfs:/"), conf);
checkFsConf(flfs, conf, 3);
}
private void checkInit(FilterFileSystem fs, boolean expectInit)
throws Exception {
URI uri = URI.create("filter:/");
fs.initialize(uri, conf);
FileSystem embedFs = fs.getRawFileSystem();
if (expectInit) {
verify(embedFs, times(1)).initialize(eq(uri), eq(conf));
} else {
verify(embedFs, times(0)).initialize(any(URI.class), any(Configuration.class));
}
}
// check the given fs's conf, and all its filtered filesystems
private void checkFsConf(FileSystem fs, Configuration conf, int expectDepth) {
int depth = 0;
while (true) {
depth++;
assertFalse("depth "+depth+">"+expectDepth, depth > expectDepth);
assertEquals(conf, fs.getConf());
if (!(fs instanceof FilterFileSystem)) {
break;
}
fs = ((FilterFileSystem) fs).getRawFileSystem();
}
assertEquals(expectDepth, depth);
}
private static class FilterLocalFileSystem extends FilterFileSystem {
FilterLocalFileSystem() {
super(new LocalFileSystem());
}
}
}

9
hadoop-hdfs-project/hadoop-hdfs/CHANGES.txt
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@ -132,6 +132,9 @@ Trunk (unreleased changes)
HDFS-2878. Fix TestBlockRecovery and move it back into main test directory.
(todd)
HDFS-2655. BlockReaderLocal#skip performs unnecessary IO. (Brandon Li
via jitendra)
OPTIMIZATIONS
HDFS-2477. Optimize computing the diff between a block report and the
namenode state. (Tomasz Nykiel via hairong)
@ -210,9 +213,6 @@ Trunk (unreleased changes)
dfs.client.block.write.replace-datanode-on-failure.enable to be mistakenly
disabled. (atm)
HDFS-2525. Race between BlockPoolSliceScanner and append. (Brandon Li
via jitendra)
Release 0.23.2 - UNRELEASED
INCOMPATIBLE CHANGES
@ -251,6 +251,9 @@ Release 0.23.2 - UNRELEASED
HDFS-2950. Secondary NN HTTPS address should be listed as a
NAMESERVICE_SPECIFIC_KEY. (todd)
HDFS-2525. Race between BlockPoolSliceScanner and append. (Brandon Li
via jitendra)
HDFS-2938. Recursive delete of a large directory make namenode
unresponsive. (Hari Mankude via suresh)

66
hadoop-hdfs-project/hadoop-hdfs/src/main/java/org/apache/hadoop/hdfs/BlockReaderLocal.java
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@ -369,26 +369,68 @@ public synchronized long skip(long n) throws IOException {
if (LOG.isDebugEnabled()) {
LOG.debug("skip " + n);
}
if (n <= 0) {
return 0;
}
if (!verifyChecksum) {
return dataIn.skip(n);
}
// Skip by reading the data so we stay in sync with checksums.
// This could be implemented more efficiently in the future to
// skip to the beginning of the appropriate checksum chunk
// and then only read to the middle of that chunk.
// caller made sure newPosition is not beyond EOF.
int remaining = dataBuff.remaining();
int position = dataBuff.position();
int newPosition = position + (int)n;
// if the new offset is already read into dataBuff, just reposition
if (n <= remaining) {
assert offsetFromChunkBoundary == 0;
dataBuff.position(newPosition);
return n;
}
// for small gap, read through to keep the data/checksum in sync
if (n - remaining <= bytesPerChecksum) {
dataBuff.position(position + remaining);
if (skipBuf == null) {
skipBuf = new byte[bytesPerChecksum];
}
long nSkipped = 0;
while ( nSkipped < n ) {
int toSkip = (int)Math.min(n-nSkipped, skipBuf.length);
int ret = read(skipBuf, 0, toSkip);
if ( ret <= 0 ) {
return nSkipped;
int ret = read(skipBuf, 0, (int)(n - remaining));
return ret;
}
nSkipped += ret;
// optimize for big gap: discard the current buffer, skip to
// the beginning of the appropriate checksum chunk and then
// read to the middle of that chunk to be in sync with checksums.
this.offsetFromChunkBoundary = newPosition % bytesPerChecksum;
long toskip = n - remaining - this.offsetFromChunkBoundary;
dataBuff.clear();
checksumBuff.clear();
long dataSkipped = dataIn.skip(toskip);
if (dataSkipped != toskip) {
throw new IOException("skip error in data input stream");
}
long checkSumOffset = (dataSkipped / bytesPerChecksum) * checksumSize;
if (checkSumOffset > 0) {
long skipped = checksumIn.skip(checkSumOffset);
if (skipped != checkSumOffset) {
throw new IOException("skip error in checksum input stream");
}
}
// read into the middle of the chunk
if (skipBuf == null) {
skipBuf = new byte[bytesPerChecksum];
}
assert skipBuf.length == bytesPerChecksum;
assert this.offsetFromChunkBoundary < bytesPerChecksum;
int ret = read(skipBuf, 0, this.offsetFromChunkBoundary);
if (ret == -1) { // EOS
return toskip;
} else {
return (toskip + ret);
}
return nSkipped;
}
@Override

46
hadoop-hdfs-project/hadoop-hdfs/src/test/java/org/apache/hadoop/hdfs/TestShortCircuitLocalRead.java
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@ -239,6 +239,52 @@ public ClientDatanodeProtocol run() throws Exception {
}
}
@Test
public void testSkipWithVerifyChecksum() throws IOException {
int size = blockSize;
Configuration conf = new Configuration();
conf.setBoolean(DFSConfigKeys.DFS_CLIENT_READ_SHORTCIRCUIT_KEY, true);
conf.setBoolean(DFSConfigKeys.DFS_CLIENT_READ_SHORTCIRCUIT_SKIP_CHECKSUM_KEY, false);
conf.set(DFSConfigKeys.DFS_BLOCK_LOCAL_PATH_ACCESS_USER_KEY,
UserGroupInformation.getCurrentUser().getShortUserName());
if (simulatedStorage) {
conf.setBoolean(SimulatedFSDataset.CONFIG_PROPERTY_SIMULATED, true);
}
MiniDFSCluster cluster = new MiniDFSCluster.Builder(conf).numDataNodes(1)
.format(true).build();
FileSystem fs = cluster.getFileSystem();
try {
// check that / exists
Path path = new Path("/");
assertTrue("/ should be a directory", fs.getFileStatus(path)
.isDirectory() == true);
byte[] fileData = AppendTestUtil.randomBytes(seed, size*3);
// create a new file in home directory. Do not close it.
Path file1 = new Path("filelocal.dat");
FSDataOutputStream stm = createFile(fs, file1, 1);
// write to file
stm.write(fileData);
stm.close();
// now test the skip function
FSDataInputStream instm = fs.open(file1);
byte[] actual = new byte[fileData.length];
// read something from the block first, otherwise BlockReaderLocal.skip()
// will not be invoked
int nread = instm.read(actual, 0, 3);
long skipped = 2*size+3;
instm.seek(skipped);
nread = instm.read(actual, (int)(skipped + nread), 3);
instm.close();
} finally {
fs.close();
cluster.shutdown();
}
}
/**
* Test to run benchmarks between shortcircuit read vs regular read with
* specified number of threads simultaneously reading.

6
hadoop-mapreduce-project/CHANGES.txt
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@ -55,6 +55,8 @@ Trunk (unreleased changes)
BUG FIXES
MAPREDUCE-3757. [Rumen] Fixed Rumen Folder to adjust shuffleFinished and
sortFinished times when needed.
MAPREDUCE-3194. "mapred mradmin" command is broken in mrv2
(Jason Lowe via bobby)
@ -116,6 +118,10 @@ Release 0.23.2 - UNRELEASED
MAPREDUCE-3864. Fix cluster setup docs for correct SecondaryNameNode
HTTPS parameters. (todd)
MAPREDUCE-3856. Instances of RunningJob class givs incorrect job tracking
urls when mutiple jobs are submitted from same client jvm. (Eric Payne via
sseth)
Release 0.23.1 - 2012-02-08
INCOMPATIBLE CHANGES

4
hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-jobclient/src/main/java/org/apache/hadoop/mapred/ClientServiceDelegate.java
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@ -81,8 +81,7 @@ public class ClientServiceDelegate {
private static final Log LOG = LogFactory.getLog(ClientServiceDelegate.class);
// Caches for per-user NotRunningJobs
private static HashMap<JobState, HashMap<String, NotRunningJob>> notRunningJobs =
new HashMap<JobState, HashMap<String, NotRunningJob>>();
private HashMap<JobState, HashMap<String, NotRunningJob>> notRunningJobs;
private final Configuration conf;
private final JobID jobId;
@ -108,6 +107,7 @@ public ClientServiceDelegate(Configuration conf, ResourceMgrDelegate rm,
this.jobId = jobId;
this.historyServerProxy = historyServerProxy;
this.appId = TypeConverter.toYarn(jobId).getAppId();
notRunningJobs = new HashMap<JobState, HashMap<String, NotRunningJob>>();
}
// Get the instance of the NotRunningJob corresponding to the specified

31
hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-jobclient/src/test/java/org/apache/hadoop/mapreduce/v2/TestMRJobs.java
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@ -148,10 +148,15 @@ public void testSleepJob() throws IOException, InterruptedException,
job.addFileToClassPath(APP_JAR); // The AppMaster jar itself.
job.setJarByClass(SleepJob.class);
job.setMaxMapAttempts(1); // speed up failures
job.waitForCompletion(true);
job.submit();
String trackingUrl = job.getTrackingURL();
String jobId = job.getJobID().toString();
boolean succeeded = job.waitForCompletion(true);
Assert.assertTrue(succeeded);
Assert.assertEquals(JobStatus.State.SUCCEEDED, job.getJobState());
Assert.assertTrue("Tracking URL was " + trackingUrl +
" but didn't Match Job ID " + jobId ,
trackingUrl.endsWith(jobId.substring(jobId.lastIndexOf("_")) + "/"));
verifySleepJobCounters(job);
verifyTaskProgress(job);
@ -209,9 +214,15 @@ public void testRandomWriter() throws IOException, InterruptedException,
job.addFileToClassPath(APP_JAR); // The AppMaster jar itself.
job.setJarByClass(RandomTextWriterJob.class);
job.setMaxMapAttempts(1); // speed up failures
job.submit();
String trackingUrl = job.getTrackingURL();
String jobId = job.getJobID().toString();
boolean succeeded = job.waitForCompletion(true);
Assert.assertTrue(succeeded);
Assert.assertEquals(JobStatus.State.SUCCEEDED, job.getJobState());
Assert.assertTrue("Tracking URL was " + trackingUrl +
" but didn't Match Job ID " + jobId ,
trackingUrl.endsWith(jobId.substring(jobId.lastIndexOf("_")) + "/"));
// Make sure there are three files in the output-dir
@ -316,9 +327,14 @@ protected Job runFailingMapperJob()
new Path(mrCluster.getTestWorkDir().getAbsolutePath(),
"failmapper-output"));
job.addFileToClassPath(APP_JAR); // The AppMaster jar itself.
job.submit();
String trackingUrl = job.getTrackingURL();
String jobId = job.getJobID().toString();
boolean succeeded = job.waitForCompletion(true);
Assert.assertFalse(succeeded);
Assert.assertTrue("Tracking URL was " + trackingUrl +
" but didn't Match Job ID " + jobId ,
trackingUrl.endsWith(jobId.substring(jobId.lastIndexOf("_")) + "/"));
return job;
}
@ -360,8 +376,14 @@ public Void run() throws Exception {
// //Job with reduces
// Job job = sleepJob.createJob(3, 2, 10000, 1, 10000, 1);
job.addFileToClassPath(APP_JAR); // The AppMaster jar itself.
job.submit();
String trackingUrl = job.getTrackingURL();
String jobId = job.getJobID().toString();
job.waitForCompletion(true);
Assert.assertEquals(JobStatus.State.SUCCEEDED, job.getJobState());
Assert.assertTrue("Tracking URL was " + trackingUrl +
" but didn't Match Job ID " + jobId ,
trackingUrl.endsWith(jobId.substring(jobId.lastIndexOf("_")) + "/"));
return null;
}
});
@ -444,7 +466,12 @@ public void testDistributedCache() throws Exception {
job.setMaxMapAttempts(1); // speed up failures
job.submit();
String trackingUrl = job.getTrackingURL();
String jobId = job.getJobID().toString();
Assert.assertTrue(job.waitForCompletion(false));
Assert.assertTrue("Tracking URL was " + trackingUrl +
" but didn't Match Job ID " + jobId ,
trackingUrl.endsWith(jobId.substring(jobId.lastIndexOf("_")) + "/"));
}
private Path createTempFile(String filename, String contents)

2
hadoop-mapreduce-project/src/docs/src/documentation/content/xdocs/rumen.xml
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@ -293,7 +293,7 @@
<tr>
<td><code>-output-duration</code></td>
<td>This parameter defines the final runtime of the trace.
Default value if <strong>1 hour</strong>.
Default value is <strong>1 hour</strong>.
</td>
<td>'<code>-output-duration 30m</code>'
implies that the resulting trace will have a max runtime of

BIN
hadoop-mapreduce-project/src/test/tools/data/rumen/small-trace-test/goldFoldedTrace.json.gz
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8
hadoop-project/pom.xml
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@ -749,6 +749,11 @@
</pluginManagement>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>findbugs-maven-plugin</artifactId>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-antrun-plugin</artifactId>
@ -932,6 +937,9 @@
<goals>
<goal>jar</goal>
</goals>
<configuration>
<destDir>${project.build.directory}</destDir>
</configuration>
</execution>
</executions>
</plugin>

6
hadoop-tools/hadoop-rumen/src/main/java/org/apache/hadoop/tools/rumen/LoggedTaskAttempt.java
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@ -275,6 +275,12 @@ void arraySetPhysMemKbytes(int[] physMemKbytes) {
void adjustTimes(long adjustment) {
startTime += adjustment;
finishTime += adjustment;
// For reduce attempts, adjust the different phases' finish times also
if (sortFinished >= 0) {
shuffleFinished += adjustment;
sortFinished += adjustment;
}
}
public long getShuffleFinished() {