HDFS-8703. Merge refactor of DFSInputStream from ErasureCoding branch (Contributed by Vinayakumar B)
This commit is contained in:
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37d7395773
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@ -696,6 +696,9 @@ Release 2.8.0 - UNRELEASED
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HDFS-8666. Speedup the TestMover tests. (Walter Su via jing9)
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HDFS-8703. Merge refactor of DFSInputStream from ErasureCoding branch
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(vinayakumarb)
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OPTIMIZATIONS
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HDFS-8026. Trace FSOutputSummer#writeChecksumChunks rather than
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@ -1181,7 +1181,7 @@ public DFSInputStream open(String src, int buffersize, boolean verifyChecksum)
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// Get block info from namenode
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TraceScope scope = getPathTraceScope("newDFSInputStream", src);
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try {
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return new DFSInputStream(this, src, verifyChecksum);
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return new DFSInputStream(this, src, verifyChecksum, null);
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} finally {
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scope.close();
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}
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@ -44,6 +44,7 @@
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import java.util.concurrent.TimeUnit;
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import java.util.concurrent.atomic.AtomicBoolean;
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import com.google.common.base.Preconditions;
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import org.apache.commons.io.IOUtils;
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import org.apache.hadoop.classification.InterfaceAudience;
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import org.apache.hadoop.fs.ByteBufferReadable;
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@ -94,35 +95,35 @@ public class DFSInputStream extends FSInputStream
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@VisibleForTesting
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public static boolean tcpReadsDisabledForTesting = false;
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private long hedgedReadOpsLoopNumForTesting = 0;
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private final DFSClient dfsClient;
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private AtomicBoolean closed = new AtomicBoolean(false);
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private final String src;
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private final boolean verifyChecksum;
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protected final DFSClient dfsClient;
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protected AtomicBoolean closed = new AtomicBoolean(false);
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protected final String src;
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protected final boolean verifyChecksum;
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// state by stateful read only:
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// (protected by lock on this)
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/////
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private DatanodeInfo currentNode = null;
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private LocatedBlock currentLocatedBlock = null;
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private long pos = 0;
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private long blockEnd = -1;
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protected LocatedBlock currentLocatedBlock = null;
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protected long pos = 0;
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protected long blockEnd = -1;
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private BlockReader blockReader = null;
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////
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// state shared by stateful and positional read:
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// (protected by lock on infoLock)
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////
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private LocatedBlocks locatedBlocks = null;
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protected LocatedBlocks locatedBlocks = null;
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private long lastBlockBeingWrittenLength = 0;
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private FileEncryptionInfo fileEncryptionInfo = null;
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private CachingStrategy cachingStrategy;
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protected CachingStrategy cachingStrategy;
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////
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private final ReadStatistics readStatistics = new ReadStatistics();
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protected final ReadStatistics readStatistics = new ReadStatistics();
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// lock for state shared between read and pread
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// Note: Never acquire a lock on <this> with this lock held to avoid deadlocks
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// (it's OK to acquire this lock when the lock on <this> is held)
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private final Object infoLock = new Object();
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protected final Object infoLock = new Object();
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/**
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* Track the ByteBuffers that we have handed out to readers.
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@ -239,7 +240,7 @@ void clear() {
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* back to the namenode to get a new list of block locations, and is
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* capped at maxBlockAcquireFailures
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*/
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private int failures = 0;
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protected int failures = 0;
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/* XXX Use of CocurrentHashMap is temp fix. Need to fix
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* parallel accesses to DFSInputStream (through ptreads) properly */
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@ -252,24 +253,28 @@ void addToDeadNodes(DatanodeInfo dnInfo) {
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deadNodes.put(dnInfo, dnInfo);
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}
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DFSInputStream(DFSClient dfsClient, String src, boolean verifyChecksum
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) throws IOException, UnresolvedLinkException {
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DFSInputStream(DFSClient dfsClient, String src, boolean verifyChecksum,
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LocatedBlocks locatedBlocks) throws IOException, UnresolvedLinkException {
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this.dfsClient = dfsClient;
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this.verifyChecksum = verifyChecksum;
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this.src = src;
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synchronized (infoLock) {
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this.cachingStrategy = dfsClient.getDefaultReadCachingStrategy();
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}
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openInfo();
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this.locatedBlocks = locatedBlocks;
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openInfo(false);
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}
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/**
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* Grab the open-file info from namenode
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* @param refreshLocatedBlocks whether to re-fetch locatedblocks
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*/
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void openInfo() throws IOException, UnresolvedLinkException {
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void openInfo(boolean refreshLocatedBlocks) throws IOException,
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UnresolvedLinkException {
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final DfsClientConf conf = dfsClient.getConf();
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synchronized(infoLock) {
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lastBlockBeingWrittenLength = fetchLocatedBlocksAndGetLastBlockLength();
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lastBlockBeingWrittenLength =
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fetchLocatedBlocksAndGetLastBlockLength(refreshLocatedBlocks);
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int retriesForLastBlockLength = conf.getRetryTimesForGetLastBlockLength();
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while (retriesForLastBlockLength > 0) {
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// Getting last block length as -1 is a special case. When cluster
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@ -281,7 +286,8 @@ void openInfo() throws IOException, UnresolvedLinkException {
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+ "Datanodes might not have reported blocks completely."
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+ " Will retry for " + retriesForLastBlockLength + " times");
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waitFor(conf.getRetryIntervalForGetLastBlockLength());
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lastBlockBeingWrittenLength = fetchLocatedBlocksAndGetLastBlockLength();
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lastBlockBeingWrittenLength =
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fetchLocatedBlocksAndGetLastBlockLength(true);
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} else {
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break;
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}
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@ -302,8 +308,12 @@ private void waitFor(int waitTime) throws IOException {
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}
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}
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private long fetchLocatedBlocksAndGetLastBlockLength() throws IOException {
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final LocatedBlocks newInfo = dfsClient.getLocatedBlocks(src, 0);
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private long fetchLocatedBlocksAndGetLastBlockLength(boolean refresh)
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throws IOException {
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LocatedBlocks newInfo = locatedBlocks;
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if (locatedBlocks == null || refresh) {
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newInfo = dfsClient.getLocatedBlocks(src, 0);
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}
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if (DFSClient.LOG.isDebugEnabled()) {
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DFSClient.LOG.debug("newInfo = " + newInfo);
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}
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@ -441,7 +451,7 @@ public List<LocatedBlock> getAllBlocks() throws IOException {
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* @return located block
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* @throws IOException
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*/
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private LocatedBlock getBlockAt(long offset) throws IOException {
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protected LocatedBlock getBlockAt(long offset) throws IOException {
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synchronized(infoLock) {
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assert (locatedBlocks != null) : "locatedBlocks is null";
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@ -476,7 +486,7 @@ else if (offset >= locatedBlocks.getFileLength()) {
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}
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/** Fetch a block from namenode and cache it */
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private void fetchBlockAt(long offset) throws IOException {
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protected void fetchBlockAt(long offset) throws IOException {
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synchronized(infoLock) {
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int targetBlockIdx = locatedBlocks.findBlock(offset);
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if (targetBlockIdx < 0) { // block is not cached
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@ -579,7 +589,7 @@ private synchronized DatanodeInfo blockSeekTo(long target) throws IOException {
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}
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// Will be getting a new BlockReader.
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closeCurrentBlockReader();
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closeCurrentBlockReaders();
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//
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// Connect to best DataNode for desired Block, with potential offset
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@ -631,8 +641,8 @@ private synchronized DatanodeInfo blockSeekTo(long target) throws IOException {
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fetchBlockAt(target);
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} else {
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connectFailedOnce = true;
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DFSClient.LOG.warn("Failed to connect to " + targetAddr + " for block "
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+targetBlock.getBlock()+ ", add to deadNodes and continue. " + ex, ex);
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DFSClient.LOG.warn("Failed to connect to " + targetAddr + " for block"
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+ ", add to deadNodes and continue. " + ex, ex);
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// Put chosen node into dead list, continue
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addToDeadNodes(chosenNode);
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}
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@ -696,7 +706,7 @@ public void accept(ByteBuffer k, Object v) {
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"unreleased ByteBuffers allocated by read(). " +
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"Please release " + builder.toString() + ".");
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}
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closeCurrentBlockReader();
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closeCurrentBlockReaders();
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super.close();
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}
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@ -713,12 +723,22 @@ public synchronized int read() throws IOException {
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* Wraps different possible read implementations so that readBuffer can be
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* strategy-agnostic.
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*/
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private interface ReaderStrategy {
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interface ReaderStrategy {
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public int doRead(BlockReader blockReader, int off, int len)
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throws ChecksumException, IOException;
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/**
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* Copy data from the src ByteBuffer into the read buffer.
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* @param src The src buffer where the data is copied from
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* @param offset Useful only when the ReadStrategy is based on a byte array.
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* Indicate the offset of the byte array for copy.
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* @param length Useful only when the ReadStrategy is based on a byte array.
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* Indicate the length of the data to copy.
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*/
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public int copyFrom(ByteBuffer src, int offset, int length);
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}
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private void updateReadStatistics(ReadStatistics readStatistics,
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protected void updateReadStatistics(ReadStatistics readStatistics,
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int nRead, BlockReader blockReader) {
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if (nRead <= 0) return;
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synchronized(infoLock) {
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@ -749,12 +769,19 @@ public int doRead(BlockReader blockReader, int off, int len)
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updateReadStatistics(readStatistics, nRead, blockReader);
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return nRead;
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}
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@Override
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public int copyFrom(ByteBuffer src, int offset, int length) {
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ByteBuffer writeSlice = src.duplicate();
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writeSlice.get(buf, offset, length);
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return length;
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}
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}
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/**
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* Used to read bytes into a user-supplied ByteBuffer
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*/
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private class ByteBufferStrategy implements ReaderStrategy {
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protected class ByteBufferStrategy implements ReaderStrategy {
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final ByteBuffer buf;
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ByteBufferStrategy(ByteBuffer buf) {
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this.buf = buf;
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@ -770,6 +797,9 @@ public int doRead(BlockReader blockReader, int off, int len)
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int ret = blockReader.read(buf);
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success = true;
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updateReadStatistics(readStatistics, ret, blockReader);
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if (ret == 0) {
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DFSClient.LOG.warn("zero");
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}
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return ret;
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} finally {
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if (!success) {
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@ -779,6 +809,15 @@ public int doRead(BlockReader blockReader, int off, int len)
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}
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}
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}
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@Override
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public int copyFrom(ByteBuffer src, int offset, int length) {
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ByteBuffer writeSlice = src.duplicate();
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int remaining = Math.min(buf.remaining(), writeSlice.remaining());
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writeSlice.limit(writeSlice.position() + remaining);
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buf.put(writeSlice);
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return remaining;
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}
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}
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/* This is a used by regular read() and handles ChecksumExceptions.
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@ -837,7 +876,7 @@ private synchronized int readBuffer(ReaderStrategy reader, int off, int len,
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}
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}
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private synchronized int readWithStrategy(ReaderStrategy strategy, int off, int len) throws IOException {
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protected synchronized int readWithStrategy(ReaderStrategy strategy, int off, int len) throws IOException {
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dfsClient.checkOpen();
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if (closed.get()) {
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throw new IOException("Stream closed");
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@ -926,7 +965,7 @@ public synchronized int read(final ByteBuffer buf) throws IOException {
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/**
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* Add corrupted block replica into map.
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*/
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private void addIntoCorruptedBlockMap(ExtendedBlock blk, DatanodeInfo node,
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protected void addIntoCorruptedBlockMap(ExtendedBlock blk, DatanodeInfo node,
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Map<ExtendedBlock, Set<DatanodeInfo>> corruptedBlockMap) {
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Set<DatanodeInfo> dnSet = null;
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if((corruptedBlockMap.containsKey(blk))) {
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@ -985,8 +1024,8 @@ private DNAddrPair chooseDataNode(LocatedBlock block,
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} catch (InterruptedException iex) {
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}
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deadNodes.clear(); //2nd option is to remove only nodes[blockId]
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openInfo();
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block = getBlockAt(block.getStartOffset());
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openInfo(true);
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block = refreshLocatedBlock(block);
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failures++;
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}
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}
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@ -998,7 +1037,7 @@ private DNAddrPair chooseDataNode(LocatedBlock block,
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* @param ignoredNodes Do not choose nodes in this array (may be null)
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* @return The DNAddrPair of the best node. Null if no node can be chosen.
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*/
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private DNAddrPair getBestNodeDNAddrPair(LocatedBlock block,
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protected DNAddrPair getBestNodeDNAddrPair(LocatedBlock block,
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Collection<DatanodeInfo> ignoredNodes) {
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DatanodeInfo[] nodes = block.getLocations();
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StorageType[] storageTypes = block.getStorageTypes();
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@ -1058,15 +1097,15 @@ private static String getBestNodeDNAddrPairErrorString(
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return errMsgr.toString();
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}
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private void fetchBlockByteRange(long blockStartOffset, long start, long end,
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protected void fetchBlockByteRange(LocatedBlock block, long start, long end,
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byte[] buf, int offset,
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Map<ExtendedBlock, Set<DatanodeInfo>> corruptedBlockMap)
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throws IOException {
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LocatedBlock block = getBlockAt(blockStartOffset);
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block = refreshLocatedBlock(block);
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while (true) {
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DNAddrPair addressPair = chooseDataNode(block, null);
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try {
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actualGetFromOneDataNode(addressPair, blockStartOffset, start, end,
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actualGetFromOneDataNode(addressPair, block, start, end,
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buf, offset, corruptedBlockMap);
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return;
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} catch (IOException e) {
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@ -1077,7 +1116,7 @@ private void fetchBlockByteRange(long blockStartOffset, long start, long end,
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}
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private Callable<ByteBuffer> getFromOneDataNode(final DNAddrPair datanode,
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final long blockStartOffset, final long start, final long end,
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final LocatedBlock block, final long start, final long end,
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final ByteBuffer bb,
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final Map<ExtendedBlock, Set<DatanodeInfo>> corruptedBlockMap,
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final int hedgedReadId) {
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@ -1090,7 +1129,7 @@ public ByteBuffer call() throws Exception {
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TraceScope scope =
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Trace.startSpan("hedgedRead" + hedgedReadId, parentSpan);
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try {
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actualGetFromOneDataNode(datanode, blockStartOffset, start, end, buf,
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actualGetFromOneDataNode(datanode, block, start, end, buf,
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offset, corruptedBlockMap);
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return bb;
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} finally {
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@ -1100,31 +1139,60 @@ public ByteBuffer call() throws Exception {
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};
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}
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/**
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* Used when reading contiguous blocks
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*/
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private void actualGetFromOneDataNode(final DNAddrPair datanode,
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long blockStartOffset, final long start, final long end, byte[] buf,
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LocatedBlock block, final long start, final long end, byte[] buf,
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int offset, Map<ExtendedBlock, Set<DatanodeInfo>> corruptedBlockMap)
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throws IOException {
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final int length = (int) (end - start + 1);
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actualGetFromOneDataNode(datanode, block, start, end, buf,
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new int[]{offset}, new int[]{length}, corruptedBlockMap);
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}
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/**
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* Read data from one DataNode.
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* @param datanode the datanode from which to read data
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* @param block the located block containing the requested data
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* @param startInBlk the startInBlk offset of the block
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* @param endInBlk the endInBlk offset of the block
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* @param buf the given byte array into which the data is read
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* @param offsets the data may be read into multiple segments of the buf
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* (when reading a striped block). this array indicates the
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* offset of each buf segment.
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* @param lengths the length of each buf segment
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* @param corruptedBlockMap map recording list of datanodes with corrupted
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* block replica
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*/
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void actualGetFromOneDataNode(final DNAddrPair datanode,
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LocatedBlock block, final long startInBlk, final long endInBlk,
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byte[] buf, int[] offsets, int[] lengths,
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Map<ExtendedBlock, Set<DatanodeInfo>> corruptedBlockMap)
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throws IOException {
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DFSClientFaultInjector.get().startFetchFromDatanode();
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int refetchToken = 1; // only need to get a new access token once
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int refetchEncryptionKey = 1; // only need to get a new encryption key once
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final int len = (int) (endInBlk - startInBlk + 1);
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checkReadPortions(offsets, lengths, len);
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while (true) {
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// cached block locations may have been updated by chooseDataNode()
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// or fetchBlockAt(). Always get the latest list of locations at the
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// start of the loop.
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LocatedBlock block = getBlockAt(blockStartOffset);
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block = refreshLocatedBlock(block);
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BlockReader reader = null;
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try {
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DFSClientFaultInjector.get().fetchFromDatanodeException();
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int len = (int) (end - start + 1);
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reader = getBlockReader(block, start, len, datanode.addr,
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reader = getBlockReader(block, startInBlk, len, datanode.addr,
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datanode.storageType, datanode.info);
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int nread = reader.readAll(buf, offset, len);
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for (int i = 0; i < offsets.length; i++) {
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int nread = reader.readAll(buf, offsets[i], lengths[i]);
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updateReadStatistics(readStatistics, nread, reader);
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if (nread != len) {
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if (nread != lengths[i]) {
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throw new IOException("truncated return from reader.read(): " +
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"excpected " + len + ", got " + nread);
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"excpected " + lengths[i] + ", got " + nread);
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}
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}
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DFSClientFaultInjector.get().readFromDatanodeDelay();
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return;
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@ -1169,11 +1237,40 @@ private void actualGetFromOneDataNode(final DNAddrPair datanode,
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}
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/**
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* Like {@link #fetchBlockByteRange} except we start up a second, parallel,
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* Refresh cached block locations.
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* @param block The currently cached block locations
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* @return Refreshed block locations
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* @throws IOException
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*/
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protected LocatedBlock refreshLocatedBlock(LocatedBlock block)
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throws IOException {
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return getBlockAt(block.getStartOffset());
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}
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/**
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* This method verifies that the read portions are valid and do not overlap
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* with each other.
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*/
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private void checkReadPortions(int[] offsets, int[] lengths, int totalLen) {
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Preconditions.checkArgument(offsets.length == lengths.length && offsets.length > 0);
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int sum = 0;
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for (int i = 0; i < lengths.length; i++) {
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if (i > 0) {
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int gap = offsets[i] - offsets[i - 1];
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// make sure read portions do not overlap with each other
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Preconditions.checkArgument(gap >= lengths[i - 1]);
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}
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sum += lengths[i];
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}
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Preconditions.checkArgument(sum == totalLen);
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}
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/**
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* Like {@link #fetchBlockByteRange}except we start up a second, parallel,
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* 'hedged' read if the first read is taking longer than configured amount of
|
||||
* time. We then wait on which ever read returns first.
|
||||
*/
|
||||
private void hedgedFetchBlockByteRange(long blockStartOffset, long start,
|
||||
private void hedgedFetchBlockByteRange(LocatedBlock block, long start,
|
||||
long end, byte[] buf, int offset,
|
||||
Map<ExtendedBlock, Set<DatanodeInfo>> corruptedBlockMap)
|
||||
throws IOException {
|
||||
@ -1186,7 +1283,7 @@ private void hedgedFetchBlockByteRange(long blockStartOffset, long start,
|
||||
ByteBuffer bb = null;
|
||||
int len = (int) (end - start + 1);
|
||||
int hedgedReadId = 0;
|
||||
LocatedBlock block = getBlockAt(blockStartOffset);
|
||||
block = refreshLocatedBlock(block);
|
||||
while (true) {
|
||||
// see HDFS-6591, this metric is used to verify/catch unnecessary loops
|
||||
hedgedReadOpsLoopNumForTesting++;
|
||||
@ -1198,7 +1295,7 @@ private void hedgedFetchBlockByteRange(long blockStartOffset, long start,
|
||||
chosenNode = chooseDataNode(block, ignored);
|
||||
bb = ByteBuffer.wrap(buf, offset, len);
|
||||
Callable<ByteBuffer> getFromDataNodeCallable = getFromOneDataNode(
|
||||
chosenNode, block.getStartOffset(), start, end, bb,
|
||||
chosenNode, block, start, end, bb,
|
||||
corruptedBlockMap, hedgedReadId++);
|
||||
Future<ByteBuffer> firstRequest = hedgedService
|
||||
.submit(getFromDataNodeCallable);
|
||||
@ -1235,7 +1332,7 @@ private void hedgedFetchBlockByteRange(long blockStartOffset, long start,
|
||||
}
|
||||
bb = ByteBuffer.allocate(len);
|
||||
Callable<ByteBuffer> getFromDataNodeCallable = getFromOneDataNode(
|
||||
chosenNode, block.getStartOffset(), start, end, bb,
|
||||
chosenNode, block, start, end, bb,
|
||||
corruptedBlockMap, hedgedReadId++);
|
||||
Future<ByteBuffer> oneMoreRequest = hedgedService
|
||||
.submit(getFromDataNodeCallable);
|
||||
@ -1319,7 +1416,7 @@ private void cancelAll(List<Future<ByteBuffer>> futures) {
|
||||
* @return true if block access token has expired or invalid and it should be
|
||||
* refetched
|
||||
*/
|
||||
private static boolean tokenRefetchNeeded(IOException ex,
|
||||
protected static boolean tokenRefetchNeeded(IOException ex,
|
||||
InetSocketAddress targetAddr) {
|
||||
/*
|
||||
* Get a new access token and retry. Retry is needed in 2 cases. 1)
|
||||
@ -1389,13 +1486,11 @@ private int pread(long position, byte[] buffer, int offset, int length)
|
||||
long bytesToRead = Math.min(remaining, blk.getBlockSize() - targetStart);
|
||||
try {
|
||||
if (dfsClient.isHedgedReadsEnabled()) {
|
||||
hedgedFetchBlockByteRange(blk.getStartOffset(), targetStart,
|
||||
targetStart + bytesToRead - 1, buffer, offset,
|
||||
corruptedBlockMap);
|
||||
hedgedFetchBlockByteRange(blk, targetStart,
|
||||
targetStart + bytesToRead - 1, buffer, offset, corruptedBlockMap);
|
||||
} else {
|
||||
fetchBlockByteRange(blk.getStartOffset(), targetStart,
|
||||
targetStart + bytesToRead - 1, buffer, offset,
|
||||
corruptedBlockMap);
|
||||
fetchBlockByteRange(blk, targetStart, targetStart + bytesToRead - 1,
|
||||
buffer, offset, corruptedBlockMap);
|
||||
}
|
||||
} finally {
|
||||
// Check and report if any block replicas are corrupted.
|
||||
@ -1427,7 +1522,7 @@ private int pread(long position, byte[] buffer, int offset, int length)
|
||||
* @param corruptedBlockMap map of corrupted blocks
|
||||
* @param dataNodeCount number of data nodes who contains the block replicas
|
||||
*/
|
||||
private void reportCheckSumFailure(
|
||||
protected void reportCheckSumFailure(
|
||||
Map<ExtendedBlock, Set<DatanodeInfo>> corruptedBlockMap,
|
||||
int dataNodeCount) {
|
||||
if (corruptedBlockMap.isEmpty()) {
|
||||
@ -1556,7 +1651,7 @@ public synchronized boolean seekToNewSource(long targetPos) throws IOException {
|
||||
/**
|
||||
*/
|
||||
@Override
|
||||
public synchronized long getPos() throws IOException {
|
||||
public synchronized long getPos() {
|
||||
return pos;
|
||||
}
|
||||
|
||||
@ -1590,7 +1685,7 @@ public void reset() throws IOException {
|
||||
}
|
||||
|
||||
/** Utility class to encapsulate data node info and its address. */
|
||||
private static final class DNAddrPair {
|
||||
static final class DNAddrPair {
|
||||
final DatanodeInfo info;
|
||||
final InetSocketAddress addr;
|
||||
final StorageType storageType;
|
||||
@ -1627,7 +1722,7 @@ public FileEncryptionInfo getFileEncryptionInfo() {
|
||||
}
|
||||
}
|
||||
|
||||
private void closeCurrentBlockReader() {
|
||||
protected void closeCurrentBlockReaders() {
|
||||
if (blockReader == null) return;
|
||||
// Close the current block reader so that the new caching settings can
|
||||
// take effect immediately.
|
||||
@ -1647,7 +1742,7 @@ public synchronized void setReadahead(Long readahead)
|
||||
this.cachingStrategy =
|
||||
new CachingStrategy.Builder(this.cachingStrategy).setReadahead(readahead).build();
|
||||
}
|
||||
closeCurrentBlockReader();
|
||||
closeCurrentBlockReaders();
|
||||
}
|
||||
|
||||
@Override
|
||||
@ -1657,7 +1752,7 @@ public synchronized void setDropBehind(Boolean dropBehind)
|
||||
this.cachingStrategy =
|
||||
new CachingStrategy.Builder(this.cachingStrategy).setDropBehind(dropBehind).build();
|
||||
}
|
||||
closeCurrentBlockReader();
|
||||
closeCurrentBlockReaders();
|
||||
}
|
||||
|
||||
/**
|
||||
@ -1815,6 +1910,6 @@ public synchronized void releaseBuffer(ByteBuffer buffer) {
|
||||
|
||||
@Override
|
||||
public synchronized void unbuffer() {
|
||||
closeCurrentBlockReader();
|
||||
closeCurrentBlockReaders();
|
||||
}
|
||||
}
|
||||
|
@ -343,7 +343,7 @@ public void testFailuresArePerOperation() throws Exception
|
||||
// we're starting a new operation on the user level.
|
||||
doAnswer(new FailNTimesAnswer(preSpyNN, maxBlockAcquires))
|
||||
.when(spyNN).getBlockLocations(anyString(), anyLong(), anyLong());
|
||||
is.openInfo();
|
||||
is.openInfo(true);
|
||||
// Seek to beginning forces a reopen of the BlockReader - otherwise it'll
|
||||
// just keep reading on the existing stream and the fact that we've poisoned
|
||||
// the block info won't do anything.
|
||||
|
Loading…
Reference in New Issue
Block a user